Environmental Factors Shape Water Microbial Community Structure and Function in Shrimp Cultural Enclosure Ecosystems
نویسندگان
چکیده
The effects of environmental factors on water microbial communities have been extensively studied, but little is known about the effects in shrimp cultural enclosure ecosystems. We analyzed 16S rRNA gene amplicons to determine the principal environmental factors that shape the structure and function of microbial communities in shrimp cultural enclosure ecosystems from Guangdong and Hainan provinces, in China. High quality sequences were clustered into operational taxonomic units (OTUs) at the 97% similarity level, generating 659-1,835 OTUs per sample. The 10 most abundant phyla were Proteobacteria, Bacteroidetes, Cyanobacteria, Planctomycetes, Actinobacteria, Verrucomicrobia, Firmicutes, Chlorobi, Chloroflexi, and Chlamydiae. The results of canonical correspondence analyses (CCA) indicated that salinity, total phosphate (TP), total nitrogen (TN), temperature, and pH were the most important factors shaping microbial community structure. Differences in microbial community structure between high and low salinity samples were explained by changes in the relative abundances of some OTUs (e.g., OTU5, OTU19, OTU21, OTU39, and OTU71). Moreover, the contribution of spatial distribution to the microbial community assembly was investigated via aggregated boosted tree (ABT) analyses, and the results indicated spatial isolation was not a major factor affecting the phylogenetic diversity and phylotypes of water microbial communities. Furthermore, we predicted water microbial community functional profiling using the PICRUSt program and principal component analyses (PCA) suggested that salinity was a major contributor to the structure and function of the microbial communities. Collectively, these results showed that environmental factors influenced the structure and function of water microbial communities, while salinity was the principal environmental factor instead of temperature, TP, TN, and pH in shrimp cultural enclosure ecosystems.
منابع مشابه
Deep Thoughts
The oceans encompass the most important ecosystems for the health of our planet, most of it unseen and at depths unimaginably remote and little explored. It is there that microbial communities pulse to the ancient rhythms of life on earth. Researchers are beginning to plumb these mysterious depths to learn what organisms are there and how they interact to shape the global cycles of macronutrien...
متن کاملEffects of Host Phylogeny and Habitats on Gut Microbiomes of Oriental River Prawn (Macrobrachium nipponense)
The gut microbial community is one of the richest and most complex ecosystems on earth, and the intestinal microbes play an important role in host development and health. Next generation sequencing approaches, which rapidly produce millions of short reads that enable the investigation on a culture independent basis, are now popular for exploring microbial community. Currently, the gut microbiom...
متن کاملDecoupling function and taxonomy in the global ocean microbiome.
Microbial metabolism powers biogeochemical cycling in Earth's ecosystems. The taxonomic composition of microbial communities varies substantially between environments, but the ecological causes of this variation remain largely unknown. We analyzed taxonomic and functional community profiles to determine the factors that shape marine bacterial and archaeal communities across the global ocean. By...
متن کاملThe effects of crude oil on marine microbial communities in sediments from the Persian Gulf and the Caspian Sea: A microcosm experiment
Changes in the microbial community in response to catastrophic oil spills in marine and fresh water environments have been well documented. Molecular methods provide tools for analyzing the entire bacterial community, covering also those bacteria that have not been cultured in the laboratory. In this study, four different microcosms were set up containing sediments collected from the Persian Gu...
متن کاملThe effects of crude oil on marine microbial communities in sediments from the Persian Gulf and the Caspian Sea: A microcosm experiment
Changes in the microbial community in response to catastrophic oil spills in marine and fresh water environments have been well documented. Molecular methods provide tools for analyzing the entire bacterial community, covering also those bacteria that have not been cultured in the laboratory. In this study, four different microcosms were set up containing sediments collected from the Persian Gu...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره 8 شماره
صفحات -
تاریخ انتشار 2017